rs30261145 SNP Detail

Summary

• ID
  rs30261145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGATG CCCTCTTCCT
  TTGCTCAGTT GGGAGTAAAA GAAAGTGCGG TCAAGAGGGA AAGTCCCTGG AGTAGAGGAC
  CAGATAGAGC TACATTGTGT ACTTAGGCCA GTGAGCACAC GGACCAGCTG ACCTCAAGAT
  TGGTATTGTA GAAGGCTATC TAAGAGGTTC TGCCCTGTCC ATTCTCAGAC ATAAGCAGGA
  R
  GCCTAATCAA AAGCTACTGT GAGTGGGACG ACAGCTTAGT TACTCTTTAC ACTTCTCAGA
  GCCTACAAGG TGGACCCAAG TTTGACTTTA CTCAAGGAAA GTAAAAAAGG AAGGAAGAAA
  GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGATT GTACAAAGCA TCCAAAGACA
  CAGATATTTA CATTACAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46930107	NES10689949	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30261145					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930107	NES10689949	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	721 bp proximal
F3	coagulation factor III, tissue factor	1292 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1151 bp distal
Rr584148	regulatory region 584148	326 bp distal
Rr584149	regulatory region 584149	405 bp proximal
Rr584150	regulatory region 584150	479 bp proximal
Rr584151	regulatory region 584151	1259 bp proximal
Rr584152	regulatory region 584152	1303 bp proximal
Rr584153	regulatory region 584153	1475 bp proximal
Rr584154	regulatory region 584154	1487 bp proximal
Tssr31453	transcription start site region 31453	1270 bp upstream
Tssr31454	transcription start site region 31454	1311 bp upstream
Tssr31455	transcription start site region 31455	1335 bp upstream
Tssr31456	transcription start site region 31456	1356 bp upstream
Tssr35426	transcription start site region 35426	1150 bp downstream