rs30260813 SNP Detail

Summary

• ID
  rs30260813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119547457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATCAGAA CACATCCCTG AAGTGGGAGC CAAGTTCTGG
  CCACACCTGT TCTGCTGCCA TCTTGGTGTC AATTCCTTCT GGGTGATGGA TGCTTTTATA
  M
  TGTAGTCAGA TCTGATGTGG ACAACCTGCT TGGGAATAGG GTGAAAAAAA AAGAAGGAAG
  TTGAAACCTG ACTTTGAAAG CTAGTCAGAG TTGGAGTGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45909472	mCV22718042	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss48076637	NES11868066	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A		A	A	C	C		A	A	A	C		A
ss133591139	ENSMUSSNP2079559	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321928751	CHEV_6_119520514	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30260813					SNP	A	A	A	A	A	C	A	C	A	A	C	C	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076637	NES11868066	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119547457 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	300 bp downstream
Gm44317	predicted gene, 44317	within coordinates
Rr637716	regulatory region 637716	1711 bp proximal