rs30260262 SNP Detail

Summary

• ID
  rs30260262
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30170952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCTTCTC TGTGGGGAAA
  AGTGGTTTCT GAATGTGTCC ATACCTACAC AGTGACAGGT ATATTTTAGA TCCAACACAA
  CGAGCCTCCG TAAAGCTGAC AAGTGAGAGG AGCAGCAATG CTTTTCTCAG CATTTAGCAA
  GGTGATTCTC AGCAGGTCCA CTGTGGCTTA TTGCCCCCAC CAAGTTATTA GGAGAAAATT
  K
  TCTAAACTTC ATTTGGAATG TATACCAATA AAATATATTA GTTACTATGA GTTTTTTAAA
  ATTATATTTT ATAGCAAATT TGGATGAATT TATACAATAT ATACTTATTC ATAATTTTTA
  ATTTATTGTG AGATACATTC ATACAAAATT TCTAGTATTT TCTTATTTTG TGTATGTTTA
  GAACAGTGTT TGGAGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45411367	mCV24747045	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss134729112	ENSMUSSNP2882121	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30260262					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30170952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			1913 bp proximal