rs30260142 SNP Detail

Summary

• ID
  rs30260142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGTCCC TGGAGTAGAG GACCAGATAG AGCTACATTG
  TGTACTTAGG CCAGTGAGCA CACGGACCAG CTGACCTCAA GATTGGTATT GTAGAAGGCT
  R
  TCTAAGAGGT TCTGCCCTGT CCATTCTCAG ACATAAGCAG GAAGCCTAAT CAAAAGCTAC
  TGTGAGTGGG ACGACAGCTT AGTTACTCTT TACACTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46930104	NES10689946	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	G		G		A
ss135727497	ENSMUSSNP4395110	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320905155	CHEV_3_121425120	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30260142					SNP	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930104	NES10689946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	764 bp proximal
F3	coagulation factor III, tissue factor	1335 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1108 bp distal
Rr584148	regulatory region 584148	283 bp distal
Rr584149	regulatory region 584149	448 bp proximal
Rr584150	regulatory region 584150	522 bp proximal
Rr584151	regulatory region 584151	1302 bp proximal
Rr584152	regulatory region 584152	1346 bp proximal
Rr584153	regulatory region 584153	1518 bp proximal
Rr584154	regulatory region 584154	1530 bp proximal
Tssr31453	transcription start site region 31453	1313 bp upstream
Tssr31454	transcription start site region 31454	1354 bp upstream
Tssr31455	transcription start site region 31455	1378 bp upstream
Tssr31456	transcription start site region 31456	1399 bp upstream
Tssr35426	transcription start site region 35426	1193 bp downstream