rs30260139 SNP Detail

Summary

• ID
  rs30260139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCTAAAA GAGCTTGATG GGGGAAGTTG ACAGAGGGCA
  CCATTGAGAT TATGTAAAGT ACTTGATGAA CTTGGTTGGT AAAGCTGTTA GCATGCTCTA
  K
  AAACGTGCAC AAGAAGGGCT AAAAGCGTGC CCTGGTCACT TACAGACTCC TCATCAGCCA
  CATTGCACCA CTGGTGATGC AAAAGGAAAC TGGGCTCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46930101	NES10689945	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	G	T		G		T
ss135727482	ENSMUSSNP6968845	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss320905150	CHEV_3_121424710	CHEVERUD	SCREENING_POP	f	SNP											T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30260139					SNP	T	T	T	T	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930101	NES10689945	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	1174 bp proximal
F3	coagulation factor III, tissue factor	1745 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	698 bp distal
Rr584148	regulatory region 584148	within coordinates
Rr584149	regulatory region 584149	858 bp proximal
Rr584150	regulatory region 584150	932 bp proximal
Rr584151	regulatory region 584151	1712 bp proximal
Rr584152	regulatory region 584152	1756 bp proximal
Rr584153	regulatory region 584153	1928 bp proximal
Rr584154	regulatory region 584154	1940 bp proximal
Tssr31453	transcription start site region 31453	1723 bp upstream
Tssr31454	transcription start site region 31454	1764 bp upstream
Tssr31455	transcription start site region 31455	1788 bp upstream
Tssr31456	transcription start site region 31456	1809 bp upstream
Tssr35426	transcription start site region 35426	1603 bp downstream