rs30258900 SNP Detail

Summary

• ID
  rs30258900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAACAA AACAAAACAG
  GGAAATGGTG GGTCACAAGA TCCCAGCCTC CAAGGCTTCT TAAAATAGTT ATCGTCTTTT
  GGGCTAGTGT AGTGTAGTAT AATATCAGTT TGGACCACTT CCTGTGACAT AGGCTGCCCT
  TGATGACCTG CTCAATAGAG CCACATCTGG AATGCACCAG GACCAGTGCT TTGTTCTGTG
  W
  ACAGGAGGCA CTCATAGTCT CTAGCCTGCT ACAAGTGCCA AACGACTTGG TTTCATGATA
  TGCCAGCCTG GATTTTGAGT TTCTGAGGCT CCTCTGACAT TTGACCCACA GCAGAGCAAC
  TTGAGCACCA GTGTCCAAGA GAGCCATAAA CATCTGCATA CCACATTTCT CACTTCCGTT
  TATATGCAGA CCATTGGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45410249	mCV22684209	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss134703418	ENSMUSSNP3754029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30258900					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335381 () rs orientation: forward

Symbol	Name	Function Class
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1089 bp distal
Rr574385	regulatory region 574385	456 bp distal
Rr574386	regulatory region 574386	1636 bp proximal