rs30258615 SNP Detail

Summary

• ID
  rs30258615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153430287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCTGGA CTCTGGGTAG
  ATACTGTCTG TTCACATGTG AGCCTAAGGA AGTCCAACAT TCTACCTATG TCCATCTAAT
  GAACTTTTCC AACTTAAGTC CCGGCACCTG GAGCTAGTTC CCCAGAAAAC TCATCCCTAC
  AGGGCTACCT GTAGACCTAG AAGTTTATGT GTTCCCGGGA GCAAAGGCTG CGGGCTCTCT
  R
  CACCCTCTCC TCCTCCTCTC AAACGCTGTG CCCCTCACCC ATGCTGGGCC ACTCCTTTTC
  AGCCCATGGC CCCCCACAGG CCGCGGGCTG CCCTGACCCA AGTCTCGGAG CACCCTCTGC
  TCCGCCTGCT ATACCCATCA TTCGGCACGC CGCCGCGCGC TCCCTGCCCA GCTCCTTCCA
  GACAGGAGCC AGCCGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	NZW/LacJ	PWD/PhJ
ss45411844	mCV23571364	ABI	CRAMUS_MOUSE	f	SNP	A	G				G
ss47467078	NES10328071	PERLEGEN	MM_PANEL2	f	SNP			G	G	A		G	G	G
ss136111704	ENSMUSSNP430490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	NZW/LacJ	PWD/PhJ
rs30258615					SNP	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467078	NES10328071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153430287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			738 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			514 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			737 bp downstream
Tssr36240	transcription start site region 36240			454 bp downstream