rs30258401 SNP Detail

Summary

• ID
  rs30258401
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121519037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGGGGGG GGTTGTACCT CTGTCCCTTG AGTGCTTACC
  AAGCACACCT AAGTCCTGGT TTAGATACTC AACCCAGCAT AGAATTGTCA CTGTGGTCAC
  W
  GTGTTGCTCG GGGAGGAAGT AGAAGTAGAA ATTCAGTCAC TCTTAGCTGT ACATAGGGAG
  TTCCAGGCCA TCCTACAATA CGTGGGACCC TGTATCTAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46930182	NES10689904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T		A		T
ss135727536	ENSMUSSNP5729191	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
ss320905188	CHEV_3_121428306	CHEVERUD	SCREENING_POP	f	SNP										T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30258401					SNP	T	T	T	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930182	NES10689904	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121519037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1950 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1885 bp distal
Rr584151	regulatory region 584151			1841 bp distal
Rr584152	regulatory region 584152			1669 bp distal
Rr584153	regulatory region 584153			1168 bp distal
Rr584154	regulatory region 584154			1635 bp distal
Tssr31453	transcription start site region 31453			1854 bp downstream
Tssr31454	transcription start site region 31454			1827 bp downstream
Tssr31455	transcription start site region 31455			1803 bp downstream
Tssr31456	transcription start site region 31456			1770 bp downstream
Tssr31457	transcription start site region 31457			562 bp downstream
Tssr35426	transcription start site region 35426			1979 bp upstream