rs30258398 SNP Detail

Summary

• ID
  rs30258398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121519028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCGCGGG GGGGGGGGGG GTTGTACCTC TGTCCCTTGA
  GTGCTTACCA AGCACACCTA AGTCCTGGTT TAGATACTCA ACCCAGCATA GAATTGTCAC
  Y
  GTGGTCACTG TGTTGCTCGG GGAGGAAGTA GAAGTAGAAA TTCAGTCACT CTTAGCTGTA
  CATAGGGAGT TCCAGGCCAT CCTACAATAC GTGGGACCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss46930179	NES10689903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
ss135727533	ENSMUSSNP1363612	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs30258398					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930179	NES10689903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121519028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			1063 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1941 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1876 bp distal
Rr584151	regulatory region 584151			1832 bp distal
Rr584152	regulatory region 584152			1660 bp distal
Rr584153	regulatory region 584153			1159 bp distal
Rr584154	regulatory region 584154			1626 bp distal
Tssr31453	transcription start site region 31453			1845 bp downstream
Tssr31454	transcription start site region 31454			1818 bp downstream
Tssr31455	transcription start site region 31455			1794 bp downstream
Tssr31456	transcription start site region 31456			1761 bp downstream
Tssr31457	transcription start site region 31457			553 bp downstream
Tssr35426	transcription start site region 35426			1970 bp upstream