rs30257773 SNP Detail

Summary

• ID
  rs30257773
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95036735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CTCAGTCCTC TGTGACAAAG
  S
  TGTAGACAGA GGTGGCCAGA GCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45409541	mCV24559795	ABI	CRAMUS_MOUSE	f	SNP	C	C	G		C		G
ss46771790	NES10666969	PERLEGEN	MM_PANEL2	f	SNP	C			C		C			G	G	C	G
ss135510050	ENSMUSSNP7215099	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G				G
ss320841129	CHEV_3_94933346	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30257773					SNP	C	C	G	C	C	C	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771790	NES10666969	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95036735 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	within coordinates
Scnm1	sodium channel modifier 1	295 bp downstream
Tmod4	tropomodulin 4	215 bp downstream
Tssr30497	transcription start site region 30497	1964 bp downstream