rs30257633 SNP Detail

Summary

• ID
  rs30257633
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104491976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAGGAATAG CCATCTCACC AGATGTCCCA ACTAAGTTGT CACCAGCTTC ATTTTCATGT
  TTTGGATCAC ATAGAACAGA TGTATGACTG TATAAAAGGA AATGGCGGGT CAGATATAGA
  AGTAAGACTA TGGTTCTGAA CCAGACGTCG TAGTGCAAGC CAGTAATCCC AGCACTAAGG
  AGGCTGAAGC AGGACTGTCA AAAAAACTGA GGCCAGCCTC AACTATCTAC TGAGTTCCGG
  GCCAGACTGG GCTGTGTATA GTAATACCTT ATCTCAACTA ATTAACTAAC TTAATTTTTT
  W
  AAAAAAAAAA AGAAGAAAAA TGGCTTGGCA ATTTGTGTGT GAGTGTTTTC TGTTCGTTTC
  TTTTGGGTTT TCTATTTGTT TGTTTGATAC AGGGTCTTCT GTAGCCCAGA AGACTTACTA
  AGTAGACCCC AAATTTACTA TGTAGCTGAG GCTAGTCTTG ATTCCTAATC TTTTTGCTTC
  CATTTCTCTC TCAAGTGCTC AGATTACGGG TGTACAGCAC CAAGTCTGGC TTATAGTTCT
  GTTTTTATCC CCTTGTTTTA TGTAAACCTT AATTTTCACA ACACATATCC ATTTTAATAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45411542	mCV25401313	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss135569777	ENSMUSSNP5671200	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30257633					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104491976 () rs orientation: forward

Symbol	Name	Function Class
Gm64517	predicted gene, 64517	980 bp upstream
Rr582544	regulatory region 582544	694 bp proximal
Rr582545	regulatory region 582545	991 bp proximal