rs30257558 SNP Detail

Summary

• ID
  rs30257558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152591363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAAGGG TGGTGATCTA
  CCACTGGATA GCCCTGGGGA AAGTGACCCT GACACACTGC CAGGCATTGC TGGTCCCTTT
  CACTGCATGG GACACTAGGG GGGGGGAACT GCGAATAGCT TATTGTTGCT TCCTAAACAA
  AATATCCCTA CTAAACATTT TGTTGTTAGA AAGCAATACT TAAGCCCACA GGATAAGACT
  R
  GGGTCAAGGG TTAGGGAACT TGCATGGTAT TGGGGGCCTG GGGGCTCTAT GAGAAGAATG
  AGCTAACAAA ATGTGTACAT TTAAGCCGTC TGTAAAGTTC CATCTGAAGA TGTCCTGCAG
  ACATCCAGAT GTACAATCTA GGAGTCCAAG AGCTGGATTG GATTGTTACT AGAGAAGATG
  CAAACAATTA ATGCTAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45409734	mCV25265514	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss136104375	ENSMUSSNP1607234	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321029036	CHEV_3_152548690	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30257558					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152591363 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	826 bp proximal
Rr587620	regulatory region 587620	1132 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	1433 bp downstream
Tssr32422	transcription start site region 32422	1360 bp downstream