rs30257538 SNP Detail

Summary

• ID
  rs30257538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121507042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTCTA GAGCCCTGTT
  TCTGCTCTCA CCCCTCTAGG CTCTGTGGGA ACTCGAGGTA CCCTGCAGAA CCTTCTCCTG
  TCATGATGCT TTCCGGGAGC TTAGGCATAG ATGCTATCAG GCTGGGTCGG TACAAGTGCG
  TATGTTCTGC GGCCAGACTG TAGTGTGAGC CACAGCTTTG TCCTCTCCTG CATCTGAGCC
  Y
  GAGCAGTGGT ATCAGTCTTA GCAAGTCATA GATTTCTCAA GGGGAAAGTG AGGGTGCTTG
  GAGAATCTGT TTGCCAGGGT TTACATGAGC TATAAATCAA ACACTGAGGG TGTTATTAAT
  GAGTAAACAC GAGCAGCCCG GACGGGACAG AGCTTATCGT CGCTGATAAG ACGGTGACTT
  GCTTATGAAC TGTTCGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929969	NES10690357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30257538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929969	NES10690357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121507042 () rs orientation: forward

Symbol	Name	Function Class
Gm43607	predicted gene 43607	947 bp upstream
Rr584146	regulatory region 584146	within coordinates