rs30257392 SNP Detail

Summary

• ID
  rs30257392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86761645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA ATGACCTATA TCCTTAGCTT
  Y
  AGTCATTATT ACTGAAGGTA ACTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
ss45909328	mCV25186663	ABI	CRAMUS_MOUSE	f	SNP	C		T		C
ss51749629	NES14800055	PERLEGEN	MM_PANEL2	f	SNP		T		C				C
ss133359274	ENSMUSSNP2153791	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss321847235	CHEV_6_86734657	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
rs30257392					SNP	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749629	NES14800055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86761645 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	1934 bp distal
Rr633512	regulatory region 633512	123 bp proximal
Tssr57506	transcription start site region 57506	399 bp upstream
Tssr57507	transcription start site region 57507	824 bp upstream
Tssr61859	transcription start site region 61859	1126 bp upstream
Tssr61860	transcription start site region 61860	856 bp downstream
Tssr61861	transcription start site region 61861	884 bp downstream