rs30256880 SNP Detail

Summary

• ID
  rs30256880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96012882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC TCAGAGTCTG TCTCTCTTCT
  S
  TGGTGATAGA GTGTCAGTCT AACAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45409527	mCV24943136	ABI	CRAMUS_MOUSE	f	SNP		G	G					C
ss46779614	NES10725624	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	C	C	G		C	C	G	G		C	C	G	C		G
ss135513856	ENSMUSSNP5658591	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320841459	CHEV_3_95909493	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30256880					SNP	G	G	G	C	C	C	G	C	C	C	G	G	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779614	NES10725624	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96012882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			463 bp distal
Gm30044	predicted gene, 30044			1214 bp upstream
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581150	regulatory region 581150			1189 bp distal
Rr581151	regulatory region 581151			1033 bp distal
Rr581152	regulatory region 581152			within coordinates
Tssr30678	transcription start site region 30678			1081 bp downstream
Tssr30679	transcription start site region 30679			999 bp downstream
Tssr30680	transcription start site region 30680			743 bp downstream