rs30256614 SNP Detail

Summary

• ID
  rs30256614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGGGGGAC TAGCCCTGTT TGGAATTTAT TCAAACCCTT
  CCTTGCGGCC TCTCCGACGG CTTCGGAAGA GTCCGGGACT CTCTGGCACC TTGGGCCCTC
  Y
  TTCTGTGTCG TTTTAAAGTG GGCTTTCCCT GGAATAGTTT AAAGGAGGAC TTCAGGATCT
  TCAGCTCTTT CCACGGATTG CAGTATGGGT GTTGCCTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
ss46930155	NES10689890	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T			T
ss320905176	CHEV_3_121427563	CHEVERUD	SCREENING_POP	f	SNP									C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
rs30256614					SNP	C	C	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930155	NES10689890	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			329 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1207 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1142 bp distal
Rr584150	regulatory region 584150			1900 bp distal
Rr584151	regulatory region 584151			1098 bp distal
Rr584152	regulatory region 584152			926 bp distal
Rr584153	regulatory region 584153			425 bp distal
Rr584154	regulatory region 584154			892 bp distal
Tssr31453	transcription start site region 31453			1111 bp downstream
Tssr31454	transcription start site region 31454			1084 bp downstream
Tssr31455	transcription start site region 31455			1060 bp downstream
Tssr31456	transcription start site region 31456			1027 bp downstream
Tssr31457	transcription start site region 31457			166 bp upstream
Tssr35426	transcription start site region 35426			1236 bp upstream