rs30256596 SNP Detail

Summary

• ID
  rs30256596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100454978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCATGGC TCATGTCAGT
  TGGAAGTGAA TGAAGATCAG ATTTATGCCC TTCCCAAGCC TTTGACCTTG GTTTAGGGTC
  AAGAATTTAA CATTTCCTGC TTGAGAACCT GAAGCCAAGG TGTCATTTTA ACATTAAGAG
  CATAAAGAGT CCTTGTCTTT ATCTAGGAAG GCAGAGGGTG TCTCCTCTAA CCACGGGTCC
  Y
  TATCACTGCC TCAGGCTTGT TCCAGCTCTT AGCAAGTCTA GATAGATCAC GCCCTGATGA
  CGTGTCCTAA TTATTATTAT TACTCCTATT TGGAGCTTGG TGTTAGGGAT GGAACTCCTA
  AGTAGAATGC TAAGCAAGCA CTCTAGCATT GAGCTCCACC CTCCGGTCAA CTTCAGCGAG
  CTTAAGAACC TAAAACCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45412121	mCV23818002	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss46804527	NES10732942	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	T	T	C		C	T	C	C		C
ss135540174	ENSMUSSNP4186575	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss320849126	CHEV_3_100351585	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30256596					SNP	T	T	C	C	C	T	C	T	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804527	NES10732942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100454978 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	within coordinates
Rr581871	regulatory region 581871	150 bp proximal