rs30256562 SNP Detail

Summary

• ID
  rs30256562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95874971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT TTACATTTCT GAATAGCTTT
  W
  AAAAAAACAG TATTTTTTTG TGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45410428	mCV27558191	ABI	CRAMUS_MOUSE	f	SNP		A	A			T		T
ss46778312	NES10733498	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T		A	T	A	A		A		A
ss135513281	ENSMUSSNP6565797	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					T
ss320841286	CHEV_3_95771582	CHEVERUD	SCREENING_POP	f	SNP											T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30256562					SNP	A	A	A	A	T	T	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778312	NES10733498	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95874971 () rs orientation: forward

Symbol	Name	Function Class
Rr581106	regulatory region 581106	1090 bp distal
Rr581107	regulatory region 581107	1641 bp distal
Rr581108	regulatory region 581108	1001 bp proximal