rs30256560 SNP Detail

Summary

• ID
  rs30256560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57353798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCAGT GACTTCACTT
  GCAACAACTT AATTATGAAG ATCAGTTAAG CAGTCAGATT GCTGTCTTCA TGTCTGATGG
  TGGGGCAGGA GGTCCTCACT GTAGGCTGTC AGTAAGGCAG TCAGATATGG ATGTAAAAAT
  CAGACAGAAC AGCCAGGCGT GGTGGCACTC AGGAGGCAGA GGCAGGCTGA TTTCTGAGTT
  Y
  GAGGCCAGCC TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT
  GTCTCGAAAA CCAAAAAAAA AAAAAAATCA GACAGGGGGC TGGTGAGATG GCTCAGCAGG
  TAAGAGCACC CAACTGTTTC CCTCTTCTGG AGTGTCTGAA GACAGCTTCA GTGTACTTAC
  ATATAATAAA TACATAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45410426	mCV24428257	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135201359	ENSMUSSNP1962095	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30256560					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57353798 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	172 bp distal
Rr577098	regulatory region 577098	1499 bp proximal
Rr577099	regulatory region 577099	1699 bp proximal