rs30256463 SNP Detail

Summary

• ID
  rs30256463
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57342221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA GGGAAAGCTG TATTAACTGA
  S
  ACTCCTCTTT GTTCCTTTGC AACGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45411927	mCV24479628	ABI	CRAMUS_MOUSE	f	SNP		G	C					G	C
ss46977151	NES10795788	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		C	C	G		G	G	G		C
ss135201272	ENSMUSSNP3084384	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
ss320780610	CHEV_3_57238722	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30256463					SNP	G	G	C	G	G	G	G	G	C	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977151	NES10795788	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57342221 () rs orientation: forward

Symbol	Name	Function Class
Rr577095	regulatory region 577095	439 bp proximal
Rr577096	regulatory region 577096	1751 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Intron
Tssr29185	transcription start site region 29185	997 bp downstream