rs30255648 SNP Detail

Summary

• ID
  rs30255648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGGCTTG CAAAACGAGA CGTTGATGAC AGCACTTTAA
  TGGAATAGCA TCCCACCATG TGACAGGTGC CACGTGGGCT GCACGTCTGA CGAGCTCTCC
  K
  TGAGAATTTC AGTGTAAAGA TATTTTAGAT TACAATGGGA AAAGTCCGGT TAGACTCTTT
  TTTTTTTTTT TCGTTTATGT GCATTCCTGA CTCTCACGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46930149	NES10689886	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		G		T
ss320905173	CHEV_3_121427362	CHEVERUD	SCREENING_POP	f	SNP								T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30255648					SNP	T	T	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930149	NES10689886	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1006 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			941 bp distal
Rr584150	regulatory region 584150			1699 bp distal
Rr584151	regulatory region 584151			897 bp distal
Rr584152	regulatory region 584152			725 bp distal
Rr584153	regulatory region 584153			224 bp distal
Rr584154	regulatory region 584154			691 bp distal
Tssr31453	transcription start site region 31453			910 bp downstream
Tssr31454	transcription start site region 31454			883 bp downstream
Tssr31455	transcription start site region 31455			859 bp downstream
Tssr31456	transcription start site region 31456			826 bp downstream
Tssr31457	transcription start site region 31457			367 bp upstream
Tssr35426	transcription start site region 35426			1035 bp upstream