rs30255645 SNP Detail

Summary

• ID
  rs30255645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCAGGCA AGACAGAGTG CATACCCACA TCTACCCAGT
  GCTGAGTTGA GGCAGAGGCT GAAACCAGGG GGCTTGCAAA ACGAGACGTT GATGACAGCA
  Y
  TTTAATGGAA TAGCATCCCA CCATGTGACA GGTGCCACGT GGGCTGCACG TCTGACGAGC
  TCTCCTTGAG AATTTCAGTG TAAAGATATT TTAGATTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46930146	NES10689883	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C		T	C		C
ss320905172	CHEV_3_121427296	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30255645					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930146	NES10689883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			62 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			940 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			875 bp distal
Rr584150	regulatory region 584150			1633 bp distal
Rr584151	regulatory region 584151			831 bp distal
Rr584152	regulatory region 584152			659 bp distal
Rr584153	regulatory region 584153			158 bp distal
Rr584154	regulatory region 584154			625 bp distal
Tssr31453	transcription start site region 31453			844 bp downstream
Tssr31454	transcription start site region 31454			817 bp downstream
Tssr31455	transcription start site region 31455			793 bp downstream
Tssr31456	transcription start site region 31456			760 bp downstream
Tssr31457	transcription start site region 31457			433 bp upstream
Tssr35426	transcription start site region 35426			969 bp upstream