rs30254480 SNP Detail

Summary

• ID
  rs30254480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87021998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGCCA TCCAGACATC
  CTCTGGAACA TACATTCATG AGAGATGTCT CCCTAACCAA GATCTCAGGG AAACTGATAA
  AGAAAACCAC TTCCGGCCTC AGCAGCATCC TTTCTTTTTC ATATATATGG GTATTTTTCC
  TTGTGTTTGT CTGTGCACCA CGTGTATATA GTGCCCAAGG AGGCCAGAAA AAGGTGCCAG
  R
  CTCCCTAAGA GTAAGTTGAG GACAGTTGCT AGGCAACATG TGTGTGCTGA GAATAGAACT
  CTGGTTTTTC AGAAAACTAG CCAGTAGTCT AAACCACTCA GCCATCTCTC TAGATTCGAA
  CCGTTCTTTG ACCTAAACTG TTTTGAGCCC AGAACATCTG CACTCAGTTC CGAATCTGGA
  GGCAAGCAGC ATCAAAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45411601	mCV27564039	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30254480					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87021998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kirrel1	kirre like nephrin family adhesion molecule 1			Intron
				mRNA-UTR
Rr579439	regulatory region 579439			110 bp proximal