rs30254327 SNP Detail

Summary

• ID
  rs30254327
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135211707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAAGCA AAGAGCAAGA
  ACTGGGCCCT GGGAGAGAAA GGAAACGTGT CCCAGGGCGG TCAGATTTTA TTTACTGCCA
  GGACTTTGGA GGTTCTATGT TTGGCTTAAA AGAGGCAGCC AGAGTCTCTT GGAGACCGTT
  CAGTGGGTGA AGGCGCTTGC TGCCAGGCCT GATGGCTGAG TTCAGTTCTC GGACGCCACA
  M
  AACGGAAACG CAGAACTGAT TCTCCCACCG AGTCCTCTGA CCACCCACAT AGGTGCTGTG
  GAGTGTTGCC CTGCTAATTA AGGTCAAAGT CTACCATTGT CCAGATAGCC TTCTGAGCTC
  TCACAAAATG GTGGACTCTC TTTACCAGCA GGGCTTCTCC TTCTCTGACC TTCTCCGGAG
  AGTTCAACCC CCACCCCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45410099	mCV23957931	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss135926796	ENSMUSSNP1471138	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30254327					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135211707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585726	regulatory region 585726			within coordinates
Rr585727	regulatory region 585727			230 bp distal
Rr585728	regulatory region 585728			207 bp distal