rs30254201 SNP Detail

Summary

• ID
  rs30254201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57354004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGGTC TACAAAGTGA
  GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTC GAAAACCAAA AAAAAAAAAA
  AATCAGACAG GGGGCTGGTG AGATGGCTCA GCAGGTAAGA GCACCCAACT GTTTCCCTCT
  TCTGGAGTGT CTGAAGACAG CTTCAGTGTA CTTACATATA ATAAATACAT AAATATTTTT
  W
  AAAAATAAGC AAAATTTTTA AAAAATCAGA CAGAACAAGA GGTGGTTGAA ACACAGGCAT
  GATGTGGAGC TCATGTGGAT GGAGTAACAT GCTGTTCTTT ATTCTTGTGA TATACATGAT
  ATGCGTGTCC TGTAGAAATG AGAAGCCTTT ATCACAGGAC TTGAAGGTCA GAGGCATTAA
  GGGGAATCCT GGGAAAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45412303	mCV24428256	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135201362	ENSMUSSNP3012038	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30254201					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57354004 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	378 bp distal
Rr577098	regulatory region 577098	1293 bp proximal
Rr577099	regulatory region 577099	1493 bp proximal
Rr577100	regulatory region 577100	1935 bp proximal