rs30253973 SNP Detail

Summary

• ID
  rs30253973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69628870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA ACAGCGATTC GATACTCTTA
  R
  GTTGTCCATG GTGATATTTA CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45411995	mCV24614677	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30253973					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69628870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	176 bp proximal
Gm66407	predicted gene, 66407	79 bp downstream
Nmd3	NMD3 ribosome export adaptor	484 bp upstream
Rr397719	regulatory region 397719	298 bp upstream
Rr578219	regulatory region 578219	within coordinates
Rr578220	regulatory region 578220	459 bp proximal
Tssr29546	transcription start site region 29546	459 bp upstream
Tssr29547	transcription start site region 29547	552 bp upstream