rs30253755 SNP Detail

Summary

• ID
  rs30253755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTACCAGGA GTGGTCCAGG GGCTTTGATA CATCCTCTGC
  TAGGGCCTCA GCGTACATCG AAAGCAGAGG AAAAGTAAGA CTCCCTTGAC TTTCAACTTA
  R
  GTCCCTTCAA TGACACTCCT TTCTCCCCAG CCAGCCACCC AGGCTGGTCA TCCAGGGATC
  AGCCCGGGAG CCTGGGTCTC CGCAGTACCT GGATCCGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46930125	NES10689871	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A		G	A		G
ss320905166	CHEV_3_121426172	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30253755					SNP	A	A	A	A	A	A	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930125	NES10689871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516903 () rs orientation: forward

Symbol	Name	Function Class
F3	coagulation factor III, tissue factor	283 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584148	regulatory region 584148	1335 bp distal
Rr584149	regulatory region 584149	within coordinates
Rr584150	regulatory region 584150	509 bp distal
Rr584151	regulatory region 584151	250 bp proximal
Rr584152	regulatory region 584152	294 bp proximal
Rr584153	regulatory region 584153	466 bp proximal
Rr584154	regulatory region 584154	478 bp proximal
Tssr31453	transcription start site region 31453	261 bp upstream
Tssr31454	transcription start site region 31454	302 bp upstream
Tssr31455	transcription start site region 31455	326 bp upstream
Tssr31456	transcription start site region 31456	347 bp upstream
Tssr31457	transcription start site region 31457	1557 bp upstream
Tssr35426	transcription start site region 35426	141 bp downstream