rs30253408 SNP Detail

Summary

• ID
  rs30253408
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49823452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GGTTGGTCAG ACACTGAATA
  K
  GTGACCTATG CATATTAGCT CACAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45412289	mCV24852713	ABI	CRAMUS_MOUSE	f	SNP			T				G		T
ss51521176	NES14698753	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G		T	T	T	T		T	G	T		T
ss135145496	ENSMUSSNP5560150	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
ss320753051	CHEV_3_49672925	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30253408					SNP	G	G	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51521176	NES14698753	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49823452 () rs orientation: forward

Symbol	Name	Function Class
Rr576117	regulatory region 576117	1938 bp distal
Rr576118	regulatory region 576118	584 bp distal
Rr576119	regulatory region 576119	1817 bp proximal