GGGACTACAA TGCCACTATG AGACATAATG TCCGTGACCT CCGGGATGCC TTCAAGCAGA GAGAGCGAGA TTCTGAAGGG GCCTTTTACT GTGAATGCAC M ATTTTCTAAA TAGGGAGTCT CAGACCTAGA TAAAAAATAA GTGAATGTCA GGAAGCTACC CTGTGCCACC CAACACCAGG ACAGTCCCGG ATCCCCAGA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss39662121 | mCV23424201 | ABI | CRAMUS_MOUSE | f | SNP | A | A | C | ||
ss147551897 | ENSMUSSNP1894705 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | |||
ss325701896 | CHEV_18_77743246 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
LG/J |
SM/J |
||||
rs30252085 | SNP | A | A | C | A | A |
Location: Chr18:77592203 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 1961 bp distal | ||||||
Rr541132 | regulatory region 541132 | 1907 bp distal | ||||||
Rr541133 | regulatory region 541133 | 432 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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