rs30252085 SNP Detail

Summary

• ID
  rs30252085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77592203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACTACAA TGCCACTATG AGACATAATG TCCGTGACCT
  CCGGGATGCC TTCAAGCAGA GAGAGCGAGA TTCTGAAGGG GCCTTTTACT GTGAATGCAC
  M
  ATTTTCTAAA TAGGGAGTCT CAGACCTAGA TAAAAAATAA GTGAATGTCA GGAAGCTACC
  CTGTGCCACC CAACACCAGG ACAGTCCCGG ATCCCCAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39662121	mCV23424201	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss147551897	ENSMUSSNP1894705	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325701896	CHEV_18_77743246	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30252085					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77592203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1961 bp distal
Rr541132	regulatory region 541132			1907 bp distal
Rr541133	regulatory region 541133			432 bp proximal