rs30251245 SNP Detail

Summary

• ID
  rs30251245
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152054524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGCAA GAAAATGACG
  TAAAATGCTC AATGATGTCT AAGAGGGGAA ATGTGGATTA TTTGAAAAAA TAAAGAGATG
  AGGGGATAGT ATTGCCCAGA TGGGCCTGGA ACCTCACTTT TTCCTATTCT AGCCTCCTCG
  GTGGCTGGGC CCACAGTACC ACATCTGCTC CAGATCTGTT CCCTCAGTAT AGGTGCAGTT
  S
  TAAAGCTGTT AAAAGTCTAC ATTGGGGTTT CAGGAGCATG TTGGTAGTAG AACAAAGAAT
  TTGAGGTGAG TACAGTTGGT TTATCTTTCT ATAAGAAGAT TCACGGGGCT GGAGAGATGG
  CGCAGTGTTT AAGAGGGCTT ACCAAGGTCC TGAATTAAAT TTCTAGCTCA AGTAGGTAGC
  TTGAACACCT TTATCTGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45409176	mCV25024210	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss321028723	CHEV_3_152011851	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs30251245					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152054524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1770 bp distal
Rr587535	regulatory region 587535	1226 bp distal
Rr587536	regulatory region 587536	1721 bp proximal
Tssr32407	transcription start site region 32407	313 bp downstream
Tssr32408	transcription start site region 32408	1117 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron