rs30247593 SNP Detail

Summary

• ID
  rs30247593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56544542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCTACC ACCATCTGAT
  GCCGGGCCGG CCGGCTCTGG GGTGAACTCC TGGGTCTGCA GTGAGGATGT CTTTCCAGTG
  GGATGGAGAG TGGAGGAGGG AAGCAAGCTA ATGAAGGGTA GGCATGACTT CTCAATGCTC
  ACTTAGGGGA ATGGCATTCC TGGCTGCAAG AATGATCTGG AGAAAGTTGT CTGACAGGTG
  Y
  GATACAGTGT ATCTGGAACA TATTTACTCT GTTCCACAAA CCATGGACCA CTTTGTCAGG
  AGCCCAAGTA ACCCTCATCA CTGGTCTCTT CATAGCTCCA GCACTTTCCT GCAGGTGCAG
  CCAAAAGCAA ACTTGGGTAT ACCCTCATTC TTAAGGACGT TGTGGGGTTA AGATTGGATG
  CTATGGTCGC TTGAGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47928722	NES11637714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30247593					SNP	C	C	C	C	C	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928722	NES11637714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56544542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			867 bp proximal
Gm66600	predicted gene, 66600			1066 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			787 bp proximal
Rr631076	regulatory region 631076			1536 bp proximal
Tssr1858	transcription start site region 1858			1594 bp downstream
Tssr61134	transcription start site region 61134			1364 bp downstream
Tssr61135	transcription start site region 61135			1385 bp downstream
Tssr61136	transcription start site region 61136			1551 bp downstream
Tssr61137	transcription start site region 61137			1626 bp downstream