rs30243658 SNP Detail

Summary

• ID
  rs30243658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52549956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAATGAGT TTAGCAGTCT TTATGGCCTT GTCCTCCTCA
  GTTCAATATG ATTCTGGCAG TGGTTTGAGT AGAAACTATC CAAGGAAATC CCTAGGAATT
  Y
  AAGAGACCTC TAACATGCCT ATGATAGCAA TTCCAGCTCT CATCTTTAAT TTATTTATTA
  CTTGTCCACC GAGCAGACAC TTATCTAGAC TACAGAGTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929008	NES10804613	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30243658					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929008	NES10804613	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52549956 () rs orientation: forward

Symbol	Name	Function Class
Gm65195	predicted gene, 65195	138 bp upstream
Gm65199	predicted gene, 65199	within coordinates
Gm65200	predicted gene, 65200	763 bp downstream
Rr576558	regulatory region 576558	1342 bp distal
Rr576559	regulatory region 576559	744 bp distal
Rr576560	regulatory region 576560	367 bp distal
Rr576561	regulatory region 576561	1013 bp proximal
Rr576562	regulatory region 576562	1514 bp proximal
Rr576563	regulatory region 576563	1857 bp proximal