rs30242589 SNP Detail

Summary

• ID
  rs30242589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121456665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATAGCC TCCTCCTGAC CCTCACCCTG AGGTTACCCC
  TTCTCCCTGA CATCATATTG CCCTCTCAGT TCTTATCTCT CTGGTCTTGG CAGGCTTAAA
  Y
  TTGTGATGCT ATGCACAGAA TTGCTTGTAT TTTCCTTTCA GAGTGGTGTT GACATGACAT
  TTATTTCTAT TTTAAAACTG TCTTCTTAGC TGGACTTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46928892	NES10692766	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T		C	T	T	C		C
ss320904602	CHEV_3_121365934	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30242589					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928892	NES10692766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121456665 () rs orientation: forward

Symbol	Name	Function Class
Rr584141	regulatory region 584141	within coordinates