rs30241021 SNP Detail

Summary

• ID
  rs30241021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56547282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAGCCGC AATCCTTTAC
  GTGTAACAGT CATGTCTAGA AGATGCAAGT GTGAAAGAAG CTTACAGACC GACCTGAATG
  TGTGCACTAG CTCTTTCATC AGTGAAATTA AGATATGCAG AACCTCCAGA CATCCCTGTC
  TGGTTCTTTC AGTGAGGATC ATGTGAGGAA GCATGTCAGA CCTGCAACAG CATGGGCATG
  Y
  GTGCGCAGCA AACACTGAGA AAAATTCTTA TACATGACAA TAACATGTCT GCTTATTATT
  GCAGCCACTA ATTTTATGAG AGGATTTTAC ATATAACATT ATATATAGTA TATGTAGATA
  TATACATATA CACACACTCT ATGTGTGTGT GTGTATATAG TGTGTGTGTG TATGTGTATG
  TGTGTGTGTG TGTGTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss47928742	NES11637724	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs30241021					SNP	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928742	NES11637724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56547282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			1211 bp distal
Gm66600	predicted gene, 66600			904 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			1664 bp distal
Rr631076	regulatory region 631076			882 bp distal
Tssr1858	transcription start site region 1858			1116 bp upstream
Tssr61134	transcription start site region 61134			1365 bp upstream
Tssr61135	transcription start site region 61135			1302 bp upstream
Tssr61136	transcription start site region 61136			1175 bp upstream
Tssr61137	transcription start site region 61137			1094 bp upstream