rs30241019 SNP Detail

Summary

• ID
  rs30241019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56546896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTGCT GAGCAGGAAT
  TTGTCACAAT TAGCAAATTC TCGCCAACAT TAAGAGTCAG GCAAGTGTGT TGCTAGGTAG
  CTTCAGTTGG CTTCAGAAGA CAATAGATCG GGGATCCGAC AAACCCCTTG AGCCCAGGTT
  AATTACACCT TGGATAGTCT TTCTTCATTC ACCATGTACT TATAAAGAAA TTGGTTTGTT
  R
  TGTCACAGCA TAGCTGGGAC TTGAATGGCA AGTTCTCTTA GTGGCATCCT AGAGCCATAC
  TCACTGTGAT CGTTTGATGG CAAGATAAAT TAATCATAAA ACAACGGGTA CCACAAACCT
  CATTTCTCAT AGAAGTCTCT ATCTCTTCAC CAGAGCCAGG GCTGCATCCA AGCCCTGCTG
  GTGCATCCTA GCCGCAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47928740	NES11637723	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30241019					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928740	NES11637723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56546896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			825 bp distal
Gm66600	predicted gene, 66600			518 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			1278 bp distal
Rr631076	regulatory region 631076			496 bp distal
Tssr1858	transcription start site region 1858			730 bp upstream
Tssr61134	transcription start site region 61134			979 bp upstream
Tssr61135	transcription start site region 61135			916 bp upstream
Tssr61136	transcription start site region 61136			789 bp upstream
Tssr61137	transcription start site region 61137			708 bp upstream