rs30241017 SNP Detail

Summary

• ID
  rs30241017
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56546369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTCCAA ACAAGGAAGT
  AGCGCGATTG CCACGCCCAC TTCCTCCCAC ATTTGTCCCC AGAACTAGCC CAAAGCCCTG
  ATAGTAGTAC TTCTCAGCAG TCCCTGACCA GAAGATAATT ACCAAAGTAA CTCATTTGTG
  GGTGAGCATT TCTACACAAA AACCCTACAA CGTGCAGCTT ACAACATAAA TTAAACAATC
  K
  ATATCCAGCC GCTGGCCCAG CTCCTTTAAT TTTGAATTTG TCAAGTGCAT CGGACTCCAG
  TGTTTGTGAA GGTGGAAGAA ATCTCGAGGA TCCTATAGCT AAGTCTCAAC TGAGTGAAAA
  GGAAACCGAG GCACAGGAGG ACTTGGGATG CAGAAGACTC GCAAGCCTTT ATGTCCCCAC
  ACCATGTGTC CCTTGGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47928738	NES11637722	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	T	G	G	T	T	G	T	G
ss133228475	ENSMUSSNP6792123	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30241017					SNP	T	T	G	G	G	G	G	T	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928738	NES11637722	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56546369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			298 bp distal
Gm66600	predicted gene, 66600			within coordinates
Pde1c	phosphodiesterase 1C			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			751 bp distal
Rr631076	regulatory region 631076			within coordinates
Tssr1858	transcription start site region 1858			203 bp upstream
Tssr61134	transcription start site region 61134			452 bp upstream
Tssr61135	transcription start site region 61135			389 bp upstream
Tssr61136	transcription start site region 61136			262 bp upstream
Tssr61137	transcription start site region 61137			181 bp upstream