rs30241014 SNP Detail

Summary

• ID
  rs30241014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACAAAA CCTCAGCGAG
  GAAATCGGTA TAATTGAAAA CCGATTTCAG CAGGATGCCA GCTAAAGCAA TAGAGTAGCT
  GGAACAAGCC ACACTCCAGC TTCCCCGCCA GCAGGTCACG GTTTCCAGCG GCTCCCTCCA
  GCCAGCACCC TCCAACCCAG ATTTCCGTGC CCACCCTCTC CCCGTTAGAA TCTGCCACTG
  Y
  CACCGTCACC GCCACTGTCG TGTGCGAGAA CGCCAGGAAC GGCCGGGGTG CAAAGTTCTC
  ACCGATGGTG AAGCTGTACC CGTCGATGCT GAAAGTGGCG CTCCTACATT TCTTGAAGCC
  CTCTTTCTTG TGGCTGGTGT CCGTCATGAC TCCTGCGTTC CCGGTCCTGG CTTGAGCCCG
  CGCCCAGCCT CCCTTCGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45927603	mCV25430905	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss47928734	NES11637720	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C	T	T	C	T	C	C
ss133228463	ENSMUSSNP392034	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30241014					SNP	C	T	T	T	T	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928734	NES11637720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			within coordinates
Gm66600	predicted gene, 66600			8 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			within coordinates
Rr631076	regulatory region 631076			478 bp proximal
Tssr1858	transcription start site region 1858			536 bp downstream
Tssr61134	transcription start site region 61134			306 bp downstream
Tssr61135	transcription start site region 61135			327 bp downstream
Tssr61136	transcription start site region 61136			493 bp downstream
Tssr61137	transcription start site region 61137			568 bp downstream