rs30240820 SNP Detail

Summary

• ID
  rs30240820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52553074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAATCCA TCCAGAGCGT
  TAGTTTTTCT TGTAACCTGT CAGCATTGAG TTAATAAAAA GCCACATTCA TACAAAGCCT
  CAAAACTTGA AATAAATCAT ATTGCCAACT CATGTCATAG GTTCTACATA CTAATTTCAG
  AGAGAACGTT GAAAAAAAAT CATTATTGGA AGATAGGATT ATAGACTGAT CTTGCCAAGT
  R
  AGTTTATTAA TACACAATGC TCACCTATCT CCTTATCTCT CAATTAAAAA TATTGTGTGT
  GTGTGCCTGT GAACGTGCAT GCATTCATGT GTGTCTCTCT GTGTGTGTAT GTGTCTGTGT
  ATGTGTGTGT GTGTGTATGT GTGTGTGTGT ATGTGTGTGT GTGTATGTGT GTGTGTGTAT
  GTATATGTCT GTGTGTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929074	NES10804650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30240820					SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929074	NES10804650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52553074 () rs orientation: forward

Symbol	Name	Function Class
Gm65200	predicted gene, 65200	1251 bp upstream
Rr576561	regulatory region 576561	1605 bp distal
Rr576562	regulatory region 576562	1262 bp distal
Rr576563	regulatory region 576563	761 bp distal
Rr576564	regulatory region 576564	1593 bp proximal