rs30240222 SNP Detail

Summary

• ID
  rs30240222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGTCA GAAATCTGCC
  AGACCCTTCT CCTCCATTCG CTCCTGGTGA ACAGTTTGGA GCAGAAGAAG AGCAGAAATA
  ACAACATACC CGGGTTGGGA TTTTTTGCTT TTGTTTTTTG TTTGCTTGTT TTTTTTTTTT
  TTTTTAACTT TCCAGTGGCA AGATACATAT TCCCTCCCTG CCTGCCTGAA TCTTGCCTCT
  R
  GGAGCTAGGG ACTCTAAACG GACCTTGCCT TAGGTCTGTC TCCCTGGAGC TCTCTCCTCT
  CCTCTCAGCT TTTGTCTTCC TATCCCAGTC TCTGAACTTC TAACTTGGTG GTCTGTGCCT
  AGATATCAGT TACTCTTTGT CTCTGTGTCT GTCTACTTCC TTCGGTCCTT TCTGACTCCT
  CTTCTTATCT CCTCAATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47928732	NES11637719	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	G	G	A	G	A
ss133228457	ENSMUSSNP6076487	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30240222					SNP	G	G	A	A	A	A	A	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928732	NES11637719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			246 bp proximal
Gm66600	predicted gene, 66600			445 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			166 bp proximal
Rr631076	regulatory region 631076			915 bp proximal
Tssr1858	transcription start site region 1858			973 bp downstream
Tssr61134	transcription start site region 61134			743 bp downstream
Tssr61135	transcription start site region 61135			764 bp downstream
Tssr61136	transcription start site region 61136			930 bp downstream
Tssr61137	transcription start site region 61137			1005 bp downstream