rs30240220 SNP Detail

Summary

• ID
  rs30240220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56544969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTATGAA GATGCCAGGC CATGACAAGT CATTTCAAAA
  CAGCAGAAAC TCTGTAAAAC TATAGAGGTC AGACCTCTTC AAATGGGAGT TAACTCTGTG
  S
  TCAGAAATCT GCCAGACCCT TCTCCTCCAT TCGCTCCTGG TGAACAGTTT GGAGCAGAAG
  AAGAGCAGAA ATAACAACAT ACCCGGGTTG GGATTTTTTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47928730	NES11637718	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30240220					SNP	G	G	G	G	G	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928730	NES11637718	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56544969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			440 bp proximal
Gm66600	predicted gene, 66600			639 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			360 bp proximal
Rr631076	regulatory region 631076			1109 bp proximal
Tssr1858	transcription start site region 1858			1167 bp downstream
Tssr61134	transcription start site region 61134			937 bp downstream
Tssr61135	transcription start site region 61135			958 bp downstream
Tssr61136	transcription start site region 61136			1124 bp downstream
Tssr61137	transcription start site region 61137			1199 bp downstream