TACTCTGTTC CACAAACCAT GGACCACTTT GTCAGGAGCC CAAGTAACCC TCATCACTGG TCTCTTCATA GCTCCAGCAC TTTCCTGCAG GTGCAGCCAA AAGCAAACTT GGGTATACCC TCATTCTTAA GGACGTTGTG GGGTTAAGAT TGGATGCTAT GGTCGCTTGA GTGCTCTCTC AGATAAGAAC TTGGGAAGAG Y GCCTGTGTCA CTGCTTCAGG CCTGCTGCTA GCCAAAGCTA AAATTCCAAA ATGAAGCTGC CCCCATGCCT GTCTCCATCT CCCAGGTGGG CTCATTTCCC AAGAGTATGA AGATGCCAGG CCATGACAAG TCATTTCAAA ACAGCAGAAA CTCTGTAAAA CTATAGAGGT CAGACCTCTT CAAATGGGAG TTAACTCTGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47928726 | NES11637716 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | C | T | T | C | C | T | C | C | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30240216 | SNP | T | T | T | T | T | C | T | T | C | C | T | C | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47928726 | NES11637716 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:56544767 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17476 | CpG island 17476 | 642 bp proximal | ||||||
Gm66600 | predicted gene, 66600 | 841 bp upstream | ||||||
Pde1c | phosphodiesterase 1C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr631075 | regulatory region 631075 | 562 bp proximal | ||||||
Rr631076 | regulatory region 631076 | 1311 bp proximal | ||||||
Tssr1858 | transcription start site region 1858 | 1369 bp downstream | ||||||
Tssr61134 | transcription start site region 61134 | 1139 bp downstream | ||||||
Tssr61135 | transcription start site region 61135 | 1160 bp downstream | ||||||
Tssr61136 | transcription start site region 61136 | 1326 bp downstream | ||||||
Tssr61137 | transcription start site region 61137 | 1401 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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