rs30240105 SNP Detail

Summary

• ID
  rs30240105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121394856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGACCA ACAGCAATGG
  GGGCGGGGTT ATGGAGAAAG ATGTTATCTA ATCGCATTAA TTATTCTCTC CTACGTCTCC
  CCATCTACCC CAGCACACAA ACTGCCAAAC TGCGAGTATC TGCCATCTTG GAAGATGTGG
  AAGGGTCTAG GTGGGATGAG GGGTGGTTCA ACATGGGCGG CCCTGCTCTC TGCAAAGTCC
  Y
  TGGCATCTAC GGTGCTATTT CTGTGGCTTT TGCTGTATTT TCTGTGCTTC TTCTTTTTAA
  AAAATCCTTC TAAAAGCCTC ATACTCACGC CTCCCCTTGG AAAACAGCCT TCTGATTAGT
  GGGCTGCATC CCTCCCAGCA CAGAGCCACG ACATGCGGCT TCCTTGCTTC TAGGGTCTCT
  GTGTGTCCAT TGTCGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928406	NES10695280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30240105					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928406	NES10695280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121394856 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	471 bp distal
Rr584125	regulatory region 584125	614 bp proximal