rs30239940 SNP Detail

Summary

• ID
  rs30239940
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52552673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGGGT CTTAAGGCAA
  TGCAGAGGTA GAAGGTTGTG AGCTCAGGAG ACTGACTCCA TCATCACCAG CAATCCAGTA
  AGCTTTTGGC AGGTCCCCTT GCCTCCCTGT GCCTCAGTCT TCCCTGAAGA CTCCGAGGTT
  GCATGAGGAT GAAGGAGCTT TTAGGGCTGG TGATGTGAGT GTGATGTTGC CAGGGACCGC
  S
  GAGGACGTGG TACCGGAGGC GTCTAAGTCA GACAGCACTC AGCTGGATCC TAACCTCACC
  ACCATCTGGT TTGATTCACA TTGTAAAGCT TCTGTTTTCC TTTTGAGAGA GGATCAGGTT
  AAGCCCGATC TACCACACAA ACACACGCAC TGGGAGTTTA ACGACCGCAC TCAGAAGAAA
  GAGGCCGGAT TGATGCCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929062	NES10804641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30239940					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929062	NES10804641	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52552673 () rs orientation: forward

Symbol	Name	Function Class
Gm65199	predicted gene, 65199	1952 bp downstream
Gm65200	predicted gene, 65200	850 bp upstream
Rr576561	regulatory region 576561	1204 bp distal
Rr576562	regulatory region 576562	861 bp distal
Rr576563	regulatory region 576563	360 bp distal
Rr576564	regulatory region 576564	1994 bp proximal