rs30239513 SNP Detail

Summary

• ID
  rs30239513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52541679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGACCAT AGTTTCTGTC
  TCCCATGAAT TAATCATTTT ATTACTTCTA GATTTTAATT GTCCAAAGCC AACTTCCCAA
  TGTATTCTCT ACAGGTATCC TCACCATTGC AAAGCGGGTC TCATTTGCTT AATTTGCTAG
  ATAAGGAAAA CAACTTTGGG AGCTAATGTT ATTTAGGTAT ATTCATTTTA TTTATCTATT
  Y
  GGTACTGGGG AAATAATCTA GGGCCTTGAG AATACTAAGG TTCACTTAAC CCTGAGCTTC
  GTCAACTTTA ATTATTTTAA TTAGCATTTT TAGTTAATGG AGATTGGAAT AGAATAGCAA
  TAGGAAATTA ATAAAGTTTA ATGAGCTCAA TTTGAATGGA TCTAGCATCT TACTGTTAAA
  AGAAGCCAGT GCTGGGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928798	NES10805437	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30239513					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928798	NES10805437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52541679 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	130 bp upstream
Rr576555	regulatory region 576555	1456 bp distal
Rr576556	regulatory region 576556	104 bp proximal
Tssr33260	transcription start site region 33260	188 bp downstream
Tssr33261	transcription start site region 33261	226 bp downstream