rs30239507 SNP Detail

Summary

• ID
  rs30239507
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52541391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCATTA ACACGAACCA
  TTAAAAAATG AACTACGGAA ATAAGTACAG TGATATTTAT ATGTCTTTCA TGCCTGATAA
  AGCCTGTTTG CTGGTGGGAC AGACAGCCCA GCAAGCCGCA GCTGAGCCTC CGTGCAGGTG
  CCACGCCCAG GATTATCCTC ACCCACTGTT GCTCTCTGAC AGGATCCCTT CTTTTGCCTA
  S
  ACAGTATTCA TCTTGGGGTC TCTAATCAAG GCCTGTACTT CGAGGAGAAA ATTGAGATTA
  ATACCTCTCT ACTGGCAGAG ATTCTAAGCA TGACCATAGT TTCTGTCTCC CATGAATTAA
  TCATTTTATT ACTTCTAGAT TTTAATTGTC CAAAGCCAAC TTCCCAATGT ATTCTCTACA
  GGTATCCTCA CCATTGCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928792	NES10805432	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30239507					SNP	G	G	G	G	G	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928792	NES10805432	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52541391 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	418 bp upstream
Rr576555	regulatory region 576555	1168 bp distal
Rr576556	regulatory region 576556	392 bp proximal
Tssr33260	transcription start site region 33260	476 bp downstream
Tssr33261	transcription start site region 33261	514 bp downstream