rs30239309 SNP Detail

Summary

• ID
  rs30239309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121394709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGGAAG CACAGACAGC CGGTGAACAT CACCCTCCGC
  CAATCACCTA CAGACCAACA GCAATGGGGG CGGGGTTATG GAGAAAGATG TTATCTAATC
  R
  CATTAATTAT TCTCTCCTAC GTCTCCCCAT CTACCCCAGC ACACAAACTG CCAAACTGCG
  AGTATCTGCC ATCTTGGAAG ATGTGGAAGG GTCTAGGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45557481	mCV23989748	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss46928400	NES10695278	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G		G	G		G	G	A		G
ss135724841	ENSMUSSNP4207770	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320904156	CHEV_3_121303978	CHEVERUD	SCREENING_POP	f	SNP													G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30239309					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928400	NES10695278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121394709 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	324 bp distal
Rr584125	regulatory region 584125	761 bp proximal