rs30239307 SNP Detail

Summary

• ID
  rs30239307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121394707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCACCA GATAAACCCT
  TCACAGGGCA GGAAAAGAAA ATCCATGTTA CCTCAGTAAG CAAGCCACCG GGCCAGCAGA
  AGTGCTGAGA GCCAATGAAA TCTTGAAGGA AGCACAGACA GCCGGTGAAC ATCACCCTCC
  GCCAATCACC TACAGACCAA CAGCAATGGG GGCGGGGTTA TGGAGAAAGA TGTTATCTAA
  Y
  CGCATTAATT ATTCTCTCCT ACGTCTCCCC ATCTACCCCA GCACACAAAC TGCCAAACTG
  CGAGTATCTG CCATCTTGGA AGATGTGGAA GGGTCTAGGT GGGATGAGGG GTGGTTCAAC
  ATGGGCGGCC CTGCTCTCTG CAAAGTCCCT GGCATCTACG GTGCTATTTC TGTGGCTTTT
  GCTGTATTTT CTGTGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46928397	NES10695277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30239307					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928397	NES10695277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121394707 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	322 bp distal
Rr584125	regulatory region 584125	763 bp proximal