rs30239194 SNP Detail

Summary

• ID
  rs30239194
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGCCAG AGTGGTTTTT
  GAGGTAGCAC TGTTTTAAAG CTCACAAATG TGGTTTAATT GTTAACAAGC ACCTCTAAGA
  CCTGCCATTT GCAGTGATGT TGTTGCAAAT ACATTAAAGG CTTTCTCTTT AACCATGATT
  TCATAGTGTT CATTCATTCC TGCCACATAT AGTTTAGGGT GGCACATGTC AGAGTCAACA
  W
  CAATACAAGC TGGTCTAGAA CTTATTGTGG AGGCTGGTCT CTAAGTCACA GCAGTCCTCC
  TGCCTCAGAG CTCCTGACTG CTGGAATTCC AGGCATTAGG CCCACATATG GCTCCCTAGC
  CCATATTTCC CGGATTCTAT GATAGAAAGG CAAAGTCTGC GTATCTGTTT AGGACTCACA
  ATTGCCATAT ATGCTGCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47926122	NES11648831	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	T	T	A	T	T	A
ss133224511	ENSMUSSNP1004679	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30239194					SNP	T	A	A	A	A	A	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926122	NES11648831	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			693 bp proximal