rs30238658 SNP Detail

Summary

• ID
  rs30238658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52540742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCTT CAGGAGCATA
  TAATCTTAAA CAGCACTTCA ACTTCTAAAG TCCTGTTTCC CTAGCTGCCA AATGAGGCAC
  ACACTGCTTG CTTCTCCCAC CCGTCCTTAA ACGCAGAGAA CGTATGTAGC TTTGAGCAAT
  GCAGTGTGAC TGTTTGCTTT TCTCCTTGAT ACAATCCACT GTTATTCCTA CAAACCCCAG
  Y
  TTCTTCCTTT CTGAATGCAT GTTGGAAAGC TGATATTCAA CACAAAGTGG AAAAAATCAA
  ATCAACTGTC CTGCCTCACA TTCTACTCGG GATGCCCTAG GGGAAATTTC AAAGCAATGG
  TTCTGAAACT ATCTACAGCC ATAGCTGACA TACATATACT CAGACTAATG GAGAAACTGA
  AAGGTGGTGG GCCTTTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928783	NES10805428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30238658					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928783	NES10805428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52540742 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	1067 bp upstream
Rr576555	regulatory region 576555	519 bp distal
Rr576556	regulatory region 576556	1041 bp proximal
Tssr33260	transcription start site region 33260	1125 bp downstream
Tssr33261	transcription start site region 33261	1163 bp downstream