rs30238396 SNP Detail

Summary

• ID
  rs30238396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52551402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCTAAG TGCAGAATCC
  ACAAAAGGCC CCCTTTTACC TTTTGAACGC TGAGTTTCAA ATCCCATTGA AGAAACCTGG
  CCCATGTTAT TTACTTTTTA AATAGCTTAA CAGATGGCCC AAGAGAGAGG CTTCCTGCCC
  CAAGTGAGCA CTGAGTAGTG TTTTGGTGTG CACCTTCAGC TTCAGAGCAG AGCTTGGCTG
  Y
  GTGATGTCAT TTCCTTATAT CCGATGCATT GCTAACAGGA TGAACCCAAG TGAGATGGGA
  ACCGAACATT CTGCTGCGAA ACCAATTACG TGGGCCCATA TTAGGCAGGC GACTTCAGAA
  GGCATCATGC TAGCGCCCGG AACTTTTTAC ACCCAAGCGT AAGTCTCAGT GAGAACAAAG
  GTCTATGGCC CCGCAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929038	NES10804625	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30238396					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929038	NES10804625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52551402 () rs orientation: forward

Symbol	Name	Function Class
Gm65195	predicted gene, 65195	1584 bp upstream
Gm65199	predicted gene, 65199	681 bp downstream
Gm65200	predicted gene, 65200	within coordinates
Rr576560	regulatory region 576560	1813 bp distal
Rr576561	regulatory region 576561	within coordinates
Rr576562	regulatory region 576562	68 bp proximal
Rr576563	regulatory region 576563	411 bp proximal